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SAMPS: A Histogram Based Local Search Approach to
Simultaneously Aligning Multiple Protein Sequences
(1)SAMPS Online Server:
(2)The C++ Source code:
Code of SAMPS: can be compiled with VC++ 2005 or g++
(3)Reference alignment database we use:
BaliBASE 3.0: a benchmark alignment database for multiple protein sequences
(4)Programs we compare:
1. T-Coffee
2. MUSCLE
3. ProbCons
(5)Results:
1. BaliBASE 3.0 without noise: the clean result
2. BaliBASE 3.0 with random noise: result corresponding to table 1 in the paper
3. BaliBASE 3.0 with real sequence noise: result corresponding to table 2 and 3 in the paper
4. C-N ordered BaliBASE 3.0: result corresponding to table 4 in the paper
Should you have any question or comment, please contact
Tianwei Jiang and Quan Geng .
Aug. 2008