ECL2: Exhaustively Identifying Cross-Linked Peptides with a Linear Computational Complexity

About ECL2

ECL2 is an advanced version of ECL. It has a linear computational complexity, supports multi-thread compution, and multiple variable modifications.

Where to download ECL and how to use it?

Executable file can be downloaded from: ECL2.zip (Downloads = ).

Source code: Available upon request.

Requirement: Java version >= 1.8.

Usage:

java -Xmx25g -jar ECL2.jar parameter.def data_file.mzXML

parameter.def: Parameter file. Can be download along with ECL2.

data_file.mzXML: Spectra data file (mzXML).

ECLViewer2.0 can be downloaded from: ECLViewer2.zip (Downloads = ).

For any enquiry, please contact Fengchao Yu at fyuab@connect.ust.hk



Related Publication
Fengchao Yu, Ning Li*, Weichuan Yu*. *Joint corresponding authors.
"Exhaustively Identifying Cross-Linked Peptides with a Linear Computational Complexity".
Journal of Proteome Research, 16(10): 3942-3952, 2017.